Featured Articles | Journal of Nucleic Acids Investigation

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3 December 2024

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Featured Articles

Published: 3 December 2024

The Journal of Nucleic Acids Investigation (JNAI) is an Open Access, peer-reviewed journal that publishes original articles, letters, protocols, and reviews on all aspects of nucleic acids pre-clinical and translational research.

microRNAs and cancer

MicroRNAs, SNPs and cancer

Angela V. Vitale, Huiping Tan, Peng Jin

https://doi.org/10.4081/jnai.2236

4496

PDF: 660

HTML: 538
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MicroRNAs as biomarkers for the diagnosis and prognosis of human cancer

Daniela Asslaber, Josefina Piñón Hofbauer, Richard Greil, Alexander Egle

https://doi.org/10.4081/jnai.2130

4086

PDF: 718

HTML: 3293
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Expression of microRNA during bovine adipogenesis

Scott L. Pratt, T. Ashley Burns, Erin Curry, Susan K. Duckett

https://doi.org/10.4081/jnai.1872

7667

PDF: 0

HTML: 5476

Supplementary data table: 223
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Non-coding RNAs and cancer: microRNAs and beyond

Rachel Marie Raia, George Adrian Calin

https://doi.org/10.4081/jnai.2305

4320

PDF: 711

HTML: 2065
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Molecular markers for prediction of risk of radiation-related injury to normal tissue

Marco Ghilotti, Marco Alessandro Pierotti, Manuela Gariboldi

https://doi.org/10.4081/jnai.2055

4900

PDF: 810

HTML: 9087
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Online resources for microRNA analysis

Panagiotis Alexiou, Manolis Maragkakis, Artemis G Hatzigeorgiou

e4

https://doi.org/10.4081/jnai.2161

4425

PDF: 644

HTML: 1606
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MicroRNAs in mouse models of lymphoid malignancies

Nicola A.O. Zanesi, Yuri Pekarsky, Francesco Trapasso, George Calin, Carlo M. Croce

https://doi.org/10.4081/jnai.1727

1743

PDF: 754

HTML: 1124
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Therapeutic implications of microRNAs in human cancer

Michael Rossbach

https://doi.org/10.4081/jnai.2200

6113

PDF: 1210

HTML: 2291
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Role of microRNAs in solid tumors

Rie Hamano, Hideshi Ishii, Hiroshi Miyata, Yuichiro Doki, Masaki Mori

https://doi.org/10.4081/jnai.2164

11378

PDF: 860

HTML: 9346
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Body fluid micro(mi)RNAs as biomarkers for human cancer

Edward R. Sauter, Neel Patel

https://doi.org/10.4081/jnai.2160

5254

PDF: 903

HTML: 2366
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Role of microRNAs in the molecular diagnosis of cancer

Simona Giglio, Andrea Vecchione

https://doi.org/10.4081/jnai.1659

1338

PDF: 748

HTML: 8219
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Articles

A new entropy model for RNA: part I. A critique of the standard Jacobson-Stockmayer model applied to multiple cross links

Wayne Dawson, Kenji Yamamoto, Gota Kawai

https://doi.org/10.4081/jnai.2650

4964

PDF: 809

APPENDICES: 125
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A new entropy model for RNA: part II. Persistence-related entropic contributions to RNA secondary structure free energy calculations

Wayne Dawson, Kenji Yamamoto, Kentaro Shimizu, Gota Kawai

https://doi.org/10.4081/jnai.2651

4290

PDF: 875

APPENDIX: 334
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A new entropy model for RNA: part III. Is the folding free energy landscape of RNA funnel shaped?

Wayne Dawson, Toshikuni Takai, Nobuharu Ito, Kentaro Shimizu, Gota Kawai

https://doi.org/10.4081/jnai.2652

5341

PDF: 1171
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A new entropy model for RNA: part IV, The Minimum Free Energy (mFE) and the thermodynamically most-probable folding pathway (TMPFP)

Wayne Dawson, Gota Kawai

https://doi.org/10.4081/jnai.2653

2006

PDF: 970

Supplement S2: Methods: the vsfold5 algorithm: 178

Prediction of RNA Pseudoknots Using Heuristic Modeling with Mapping and Sequential Folding: 212
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A new entropy model for RNA: part V, Incorporating the Flory-Huggins model in structure prediction and folding

Wayne Dawson, Gota Kawai

https://doi.org/10.4081/jnai.2657

2027

PDF: 1595
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Computational prediction of candidate miRNAs and their targets from the completed Linum ussitatissimum genome and EST database

Tiffanie Y. Moss, Christopher A. Cullis

https://doi.org/10.4081/jnai.4150

3702

PDF: 793

Supplementary Files: 86
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The effect of in vitro exposure to antisense oligonucleotides on macrophage morphology and function

Ann Brasey, Raouf Igue, Loubna Djemame, Serge Séguin, Paolo Renzi, Nicolay Ferrari, Rosanne Seguin

https://doi.org/10.4081/jnai.3515

1752

PDF: 696
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Unusual 5'-regulatory structure and regulation of the murine Mlc1 gene: lack of promoter-specific functional elements

Darja Henseler, Jonathan D. Turner, Matthias Eckhardt, Maaike van der Mark, Yanina Revsin, Michelle K. Lin, Thorsten Kranz, Claude Muller, Jobst Meyer

https://doi.org/10.4081/jnai.2314

2103

PDF: 752
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Development of network inference among LexA/RecA-dependent manner genes in the SOS response

Sachiyo Aburatani

https://doi.org/10.4081/jnai.1871

2106

PDF: 612

HTML: 1354

Supplementary data table: 189
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Silencing of hpv16 e6 and e7 oncogenic activities by small interference RNA induces autophagy and apoptosis in human cervical cancer cells

Jonathan Salazar-León, Fabiola Reyes-Román, Angélica Meneses-Acosta, Horacio Merchant, Alfredo Lagunas-Martínez, Elizabeth Meda-Monzón, María Luisa Pita-López, Claudia Gómez-Cerón, Victor Hugo Bermúdez-Morales, Vicente Madrid-Marina, Oscar Peralta-Zaragoza

https://doi.org/10.4081/jnai.2583

3024

PDF: 847

Supplementary Table 1: 167

Supplementary Figure 1: 130
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GyrB vs. 16s rRna sequencing for the identification of Campylobacter jejuni, Campylobacter coli, and Campylobacter lari

Nereus William Gunther IV, Jonnee Almond, Xianghe Yan, David S Needleman

https://doi.org/10.4081/jnai.2303

5365

PDF: 822

HTML: 2517
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FHIT suppresses inflammatory carcinogenic activity by inducing apoptosis in esophageal epithelial cells

Koshi Mimori, Takehiko Yokobori, Masaaki Iwatsuki, Tomoya Sudo, Fumiaki Tanaka, Kohei Shibata, Hideshi Ishii, Masaki Mori

https://doi.org/10.4081/jnai.1460

1014

PDF: 675

HTML: 1431
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A novel detection method for heteroduplex DNA using carbodiimide-induced interrupted primer extension

Tania Tabone, Richard Cotton, Ninan Mathew, J. Des Parkin, Judy Savige

https://doi.org/10.4081/jnai.1577

1356

PDF: 654

HTML: 11482
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Robust hybridization-based genotyping probes for HPV 6, 11, 16 and 18 obtained via in vitro selection

Ivan B. Brukner, Anne-Marie Larose, Izabella Gorska-Flipot, Maja Krajinovic, Damian Labuda

https://doi.org/10.4081/jnai.1491

1551

PDF: 767

HTML: 4598
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The mitochondrial housekeeping gene 16S is inappropriate as an internal standard in comparative studies of rare mitochondrial transcripts using S1-nuclease protection assays

Sandra Ebert, Line Breumlund, Roland Nau, Uwe Michel

https://doi.org/10.4081/jnai.1588

1580

PDF: 611

HTML: 5192
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Reviews

P53 and microRNAs in chronic lymphocytic leukemia

Johannes Bloehdorn, Christian Langer, Hartmut Döhner, Thorsten Zenz, Stephan Stilgenbauer

https://doi.org/10.4081/jnai.2414

5520

PDF: 626

HTML: 4417
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HER2 splice variants and their relevance in breast cancer

Marianna Sasso, Francesca Bianchi, Valentina Ciravolo, Elda Tagliabue, Manuela Campiglio

https://doi.org/10.4081/jnai.2454

3965

PDF: 1476
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High mobility group A-interacting proteins in cancer: focus on chromobox protein homolog 7, homeodomain interacting protein kinase 2 and PATZ

Monica Fedele, Giovanna Maria Pierantoni, Pierlorenzo Pallante, Alfredo Fusco

https://doi.org/10.4081/jnai.3988

4628

PDF: 749
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Predictive molecular markers for EGFR-TKI in non-small cell lung cancer patients: new insights and critical aspects

Paola Ulivi, Daniele Calistri, Wainer Zoli, Dino Amadori

e10

https://doi.org/10.4081/jnai.1805

1414

PDF: 699

HTML: 35291
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Survival of the fittest or best adapted: HLA-dependent tumor development

Giuseppe V. Masucci, Emilia Andersson, Lisa Villabona, Hildur Helgadottir, Kjell Bergfeldt, Federica Cavallo, Guido Forni, Soldano Ferrone, Aniruddha Choudhury, Barbara Seliger, Rolf Kiessling

e9

https://doi.org/10.4081/jnai.1654

2096

PDF: 813

HTML: 3559
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Cancer immunoediting and dioxin-activating aryl hydrocarbon receptor: a missing link in the shift toward tumor immunoescape?

Ruggero Ridolfi, Massimo Guidoboni, Laura Ridolfi

https://doi.org/10.4081/jnai.1724

1942

PDF: 728

HTML: 21086
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Induced pluripotent stem cells: the long-expected revolution in medical science and practice?

Antonio Sorrentino

https://doi.org/10.4081/jnai.1625

1384

PDF: 749

HTML: 683
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Protocols

A modified Phenol-chloroform extraction method for isolating circulating cell free DNA of tumor patients

Clemens Hufnagl, Markus Stöcher, Martin Moik, Roland Geisberger, Richard Greil

https://doi.org/10.4081/jnai.4282

11174

PDF: 2463
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Practical strategies for the evaluation of high-affinity protein/nucleic acid interactions

Sarah E. Altschuler, Karen A. Lewis, Deborah S. Wuttke

https://doi.org/10.4081/jnai.4646

4522

PDF: 1468
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